# hackathon

Projet de Hackathon du master AMI2B 2022 - Pipeline d'analyse RNA-Seq écrit en Nextflow

Author
  - George
  - George-Marchment
  - ClemenceS
  - ambrebaumann
  - Lindsay Goulet
  - Lindsay-Goulet
  - Ubuntu
  - Ambre
  - Ubuntu
  - Lindsay GOULET
Publisher
  https://github.com/
License
  MIT

## Contents

- main.nf
  Size: 1.536
- run.sh
  Size: 0.33
- Rapport_Final.pdf
  Size: 1314.682
- nextflow.config
  Size: 1.444
- README.md
  Size: 2.693
- workflows/rna-seq.nf
  Size: 3.521
- pictures/paris-saclay.png
  Size: 6.433
- pictures/dag.svg
  Size: 12.195
- modules/concatenateGenome.nf
  Size: 0.874
- modules/diffAnalysis.nf
  Size: 0.967
- modules/genomeIndex.nf
  Size: 1.038
- modules/mappingFastQ.nf
  Size: 1.212
- modules/qualityControl.nf
  Size: 0.854
- modules/downloadGenome.nf
  Size: 0.985
- modules/genomeAnnotations.nf
  Size: 0.894
- modules/counting.nf
  Size: 0.915
- modules/indexBam.nf
  Size: 0.722
- modules/trimming.nf
  Size: 0.949
- modules/downloadFastqFiles.nf
  Size: 0.842
- subworkflows/quality_control_sub.nf
  Size: 1.692
- subworkflows/download_files.nf
  Size: 1.646
- Rscript/analyse.R
  Size: 6.316
- Rscript/metadata.txt
  Size: 0.142