#!/bin/sh

#SBATCH --partition=defq
#SBATCH --nodes=1
#SBATCH --cpus-per-task=1
#SBATCH --mem=4G
#SBATCH --mail-user=kiana.rashidi@bcchr.ca
#SBATCH --mail-type=ALL

#SBATCH --output=%x-%j.out
#SBATCH --error=%x-%j.error

module load singularity
Nextflow=/mnt/common/Precision/NextFlow/June2023/nextflow
$Nextflow run main-SV-only.nf -profile gpcc --seq_type "WGS" --sample_sheet "/mnt/common/Precision/NextFlow/kiana_nextflow_pipeline/nextflow_pipeline/Case6Updated.tsv" -resume -with-report -with-trace -with-timeline -with-dag pipeline_flowchart.png
#add work (-w) for separate processes
