TranscriptomeAssembly-wf.single-end

Original URL: https://github.com/EBI-Metagenomics/workflow-is-cwl/blob/master/workflows/TranscriptomeAssembly-wf.single-end.cwl

Transcriptome assembly workflow (single-end version)

Author: Arnaud Meng, Maxim Scheremetjew
Publisher: EMBL - European Bioinformatics Institute, 2019
License: https://www.apache.org/licenses/LICENSE-2.0

Contents

Main Workflow: TranscriptomeAssembly-wf.single-end
Size: 6125 bytes

Main Workflow Diagram: diagram.svg
Size: 23652 bytes

tools/FastQC/FastQC-v0.11.7.cwl
Size: 2276 bytes

tools/Transrate/Transrate-V1.0.3.cwl
Size: 2519 bytes

tools/Trinity/Trinity-V2.6.5.single-end.cwl
Size: 3364 bytes

tools/Trinity/trinity-seq_type.yaml
Size: 45 bytes

tools/Trinity/trinity-ss_lib_type.yaml
Size: 62 bytes

tools/Trimmomatic/trimmomatic-sliding_window.yaml
Size: 111 bytes

tools/Trimmomatic/trimmomatic-end_mode.yaml
Size: 45 bytes

tools/Trimmomatic/Trimmomatic-v0.36.cwl
Size: 10298 bytes

tools/Trimmomatic/trimmomatic-illumina_clipping.yaml
Size: 1707 bytes

tools/Trimmomatic/trimmomatic-phred.yaml
Size: 46 bytes

tools/Trimmomatic/trimmomatic-max_info.yaml
Size: 106 bytes