# custom_logo: ../../../docs/images/nf-core_sarek_logo.png
custom_logo_url: https://github.com/qbic-pipelines/bamtofastq/
custom_logo_title: 'qbic-pipelines/bamtofastq'

report_comment: >
    This report has been generated by the <a href="https://github.com/qbic-pipelines/bamtofastq" target="_blank">qbic-pipelines/bamtofastq</a>
    analysis pipeline. For information about how to interpret these results, please see the
    <a href="https://github.com/qbic-pipelines/bamtofastq" target="_blank">documentation</a>.
report_section_order:
    qbic-pipelines/bamtofastq-software-versions:
        order: -1000
    qbic-pipelines-bamtofastq-summary:
        order: -1100

top_modules:
    - 'fastqc':
        name: 'FastQC (Input Bam)'
        path_filters_exclude:
            - '*singleton_fastqc*'
            - '*.1_fastqc*'
            - '*.2_fastqc*'
    - 'samtools':
        name: 'Samtools (Input Bam)'
    - 'fastqc':
        name: 'FastQC (Output Reads)'
        path_filters:
            - '*singleton_fastqc*'
            - '*.1_fastqc*'
            - '*.2_fastqc*'
       
export_plots: true
