Changes in module 'nf-core/minimap2/align'
--- modules/nf-core/minimap2/align/main.nf
+++ modules/nf-core/minimap2/align/main.nf
@@ -9,8 +9,7 @@
         'biocontainers/mulled-v2-66534bcbb7031a148b13e2ad42583020b9cd25c4:1679e915ddb9d6b4abda91880c4b48857d471bd8-0' }"
 
     input:
-    tuple val(meta), path(reads)
-    path reference
+    tuple val(meta), path(reads), path(reference)
     val bam_format
     val cigar_paf_format
     val cigar_bam

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