// Import generic module functions
include { initOptions; saveFiles } from './common/functions'

params.options = [:]
options        = initOptions(params.options)

process GET_SOFTWARE_VERSIONS {
    publishDir "${params.outdir}",
        mode: params.publish_dir_mode,
        saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:'pipeline_info', meta:[:], publish_by_meta:[]) }

    conda (params.enable_conda ? "conda-forge::python=3.8.3" : null)
    if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
        container "https://depot.galaxyproject.org/singularity/python:3.8.3"
    } else {
        container "quay.io/biocontainers/python:3.8.3"
    }

    input:
    path versions

    output:
    path "software_versions.tsv"     , emit: tsv
    path 'software_versions_mqc.yaml', emit: yaml

    script: // This script is bundled with the pipeline, in nf-core/cutandrun/bin/
    """
    echo $workflow.manifest.version > pipeline.version.txt
    echo $workflow.nextflow.version > nextflow.version.txt
    scrape_software_versions.py &> software_versions_mqc.yaml
    """
}
