/*
 * -------------------------------------------------
 *  Nextflow config file for running tests
 * -------------------------------------------------
 * Defines bundled input files and everything required
 * to run a fast and simple test. Use as follows:
 * nextflow run nf-core/eager -profile test, docker (or singularity, or conda)
 */

includeConfig 'test_resources.config'

params {
  config_profile_name = 'Test profile kraken'
  config_profile_description = 'Minimal test dataset to check pipeline function with kraken metagenomic profiler'
  // Limit resources so that this can run on Travis
  max_cpus = 2
  max_memory = 6.GB
  max_time = 48.h
  genome = false
  //Input data
  metagenomic_tool = 'kraken'
  run_metagenomic_screening = true
  input = 'https://raw.githubusercontent.com/nf-core/test-datasets/eager/testdata/Mammoth/mammoth_design_fastq.tsv'
  // Genome references
  fasta = 'https://raw.githubusercontent.com/nf-core/test-datasets/eager/reference/Mammoth/Mammoth_MT_Krause.fasta'
  database = 'https://github.com/nf-core/test-datasets/raw/eager/databases/kraken/eager_test.tar.gz'
}
