name: gunc_downloaddb
description: Download database for GUNC detection of Chimerism and Contamination in Prokaryotic Genomes
keywords:
  - download
  - prokaryote
  - assembly
  - genome
  - quality control
  - chimeras
tools:
  - gunc:
      description: Python package for detection of chimerism and contamination in prokaryotic genomes.
      homepage: https://grp-bork.embl-community.io/gunc/
      documentation: https://grp-bork.embl-community.io/gunc/
      tool_dev_url: https://github.com/grp-bork/gunc
      doi: "10.1186/s13059-021-02393-0"
      licence: ["GNU General Public v3 or later (GPL v3+)"]

input:
  - db_name:
      type: string
      description: "Which database to download. Options: progenomes or gtdb"
      pattern: "progenomes|gtdb"

output:
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - db:
      type: file
      description: GUNC database file
      pattern: "*.dmnd"

authors:
  - "@jfy133"
