/*
========================================================================================
    Nextflow config file for running minimal tests
========================================================================================
    Defines input files and everything required to run a fast and simple pipeline test.

    Use as follows:
        nextflow run nf-core/mag -profile test_host_rm,<docker/singularity> --outdir <OUTDIR>

----------------------------------------------------------------------------------------
*/

params {
    config_profile_name        = 'Test profile'
    config_profile_description = 'Minimal test dataset to check pipeline function'

    // Limit resources so that this can run on GitHub Actions
    max_cpus   = 2
    max_memory = '6.GB'
    max_time   = '6.h'

    // Input data
    host_fasta                  = "https://raw.githubusercontent.com/nf-core/test-datasets/mag/host_reference/genome.hg38.chr21_10000bp_region.fa"
    input                       = 'https://raw.githubusercontent.com/nf-core/test-datasets/mag/samplesheets/samplesheet.host_rm.csv'
    min_length_unbinned_contigs = 1
    max_unbinned_contigs        = 2
    busco_db                    = "https://busco-data.ezlab.org/v5/data/lineages/bacteria_odb10.2020-03-06.tar.gz"
    skip_gtdbtk                 = true
    skip_concoct                = true
}
