ensembl_data_downloader:
  output_directory: database_ensembl
  list_taxonomies: False
  skip_gtf: False
  skip_protein: False
  skip_cds: False
  skip_cdna: False
  skip_ncrna: False
  skip_dna: False
  skip_vcf: False
  ensembl_ftp:
    base_url: ftp://ftp.ensembl.org/pub
  rewrite_local_path_ensembl_repo: 'False'
  ensembl_file_names:
    protein_sequence_file:
      file_type: pep
      file_suffixes:
      - all
      - abinitio
      file_extension: fa
    gtf_file:
      file_suffixes:
      - ''
      - abinitio.
      - chr.
      - chr_patch_hapl_scaff.
      file_extension: gtf
  ensembl_api:
    server: http://rest.ensembl.org
    species: /info/species
  logger:
    formatters:
      DEBUG: "%(asctime)s [%(levelname)7s][%(name)48s][%(module)32s, %(lineno)4s] %(message)s"
      INFO: "%(asctime)s [%(levelname)7s][%(name)48s] %(message)s"
    loglevel: DEBUG
