cosmic_data:
  output_directory: database_cosmic
  cosmic_server:
    cosmic_ftp: https://cancer.sanger.ac.uk
    mutations_url: cosmic/file_download/GRCh38/cosmic/v88
    all_cds_genes_file: All_COSMIC_Genes.fasta.gz
    mutations_file: CosmicMutantExport.tsv.gz
    mutations_cellline_url: cosmic/file_download/GRCh38/cell_lines/v92
    mutations_cellline_file: CosmicCLP_MutantExport.tsv.gz
    all_celllines_genes_file: All_CellLines_Genes.fasta.gz
    cosmic_user: ''
    cosmic_password: ''
  logger:
    formatters:
      DEBUG: "%(asctime)s [%(levelname)7s][%(name)48s][%(module)32s, %(lineno)4s] %(message)s"
      INFO: "%(asctime)s [%(levelname)7s][%(name)48s] %(message)s"
    loglevel: DEBUG
proteindb:
   filter_info:
      filter_column: 'Histology subtype 1'
      accepted_values: 'all'
      split_by_filter_column: False
      clinical_sample_file: ''
      
