name: "mmseqs_createindex"
description: Creates sequence index for mmseqs database
keywords:
  - protein sequence
  - databases
  - clustering
  - searching
  - indexing
tools:
  - "mmseqs":
      description: "MMseqs2: ultra fast and sensitive sequence search and clustering suite"
      homepage: "https://github.com/soedinglab/MMseqs2"
      documentation: "https://mmseqs.com/latest/userguide.pdf"
      tool_dev_url: "https://github.com/soedinglab/MMseqs2"
      doi: "https://doi.org/10.1093/bioinformatics/btw006"
      licence: "['GPL v3']"

input:
  - db:
      type: directory
      description: |
        Directory containing the DB to be indexed
      pattern: "*"

output:
  - versions:
      type: file
      description: |
        File containing software versions
      pattern: "versions.yml"
  - db_indexed:
      type: directory
      description: |
        Directory containing the DB and the generated indexes
      pattern: "*"

authors:
  - "@JoseEspinosa"
