name: SDRFPARSING
description: Convert SDRF proteomics files into pipelines config files
keywords:
  - SDRF
  - bioinformatics tools
  - OpenMS
tools:
  - sdrf-pipelines:
      description: |
        Convert SDRF proteomics files into pipelines config files.
      homepage: https://github.com/bigbio/sdrf-pipelines
      documentation: https://github.com/bigbio/sdrf-pipelines
input:
  - sdrf_files:
      type: file
      description: |
        A valid sdrf file
output:
  - experimental_design:
      type: file
      description: experimental design file in OpenMS format
      pattern: "experimental_design.tsv"
  - openms:
      type: file
      description: config file with search engine parameters in OpenMS nomenclature
      pattern: "openms.tsv"
  - mqpar:
      type: file
      description: maxquant configuration file
      pattern: "*.xml"
  - log:
      type: file
      description: log file
      pattern: "*.log"
  - version:
      type: file
      description: File containing software version
      pattern: "versions.yml"
authors:
  - "@daichengxin"
