name: idmapper
description: Assigns protein/peptide identifications to features or consensus features.
keywords:
  - feature
  - identification
  - OpenMS
tools:
  - IDMapper:
      description: |
        Assigns protein/peptide identifications to features or consensus features.
      homepage: https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/nightly/html/TOPP_IDMapper.html
      documentation: https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/nightly/html/TOPP_IDMapper.html
input:
  - meta:
      type: map
      description: Groovy Map containing sample information
  - id_file:
      type: file
      description: |
        Identifications file
      pattern: "*.{idXML, mzid}"
  - map_file:
      type: file
      description: Feature map/consensus map file
      pattern: "*.{featureXML, consensusXML, mzq}"
output:
  - id_map:
      type: file
      description: Output file
      pattern: "*.{featureXML, consensusXML, mzq}"
  - log:
      type: file
      description: log file
      pattern: "*.log"
  - version:
      type: file
      description: File containing software version
      pattern: "versions.yml"
authors:
  - "@daichengxin"
