name: MSSTATS
description: A module to performance proteomics statistical analysis using MSstats tool.
keywords:
  - MSstats
  - Downstream Analysis
tools:
  - MSstats:
      description: |
        An R package for statistical analysis of quantitative mass spectrometry-based proteomics experiments.
      homepage: https://github.com/Vitek-Lab/MSstats
      documentation: https://www.bioconductor.org/packages/release/bioc/manuals/MSstats/man/MSstats.pdf
input:
  - out_msstats:
      type: file
      description: MSstats input file with analysis results for statistical downstream analysis in MSstats.
      pattern: "out_msstats.csv"
output:
  - msstats_csv:
      type: file
      description: csv file with results of statistical testing
      pattern: "*.csv"
  - version:
      type: file
      description: File containing software version
      pattern: "versions.yml"
  - log:
      type: file
      description: log file
      pattern: "*.log"
authors:
  - "@daichengxin"
