name: proteininference
description: Computes a protein identification score based on an aggregation of scores of identified peptides.
keywords:
  - protein
  - inference
  - OpenMS
tools:
  - ProteinInference:
      description: |
        Computes a protein identification score based on an aggregation of scores of identified peptides.
      homepage: https://abibuilder.cs.uni-tuebingen.de/archive/openms/Documentation/nightly/html/TOPP_ProteinInference.html
      documentation: https://abibuilder.cs.uni-tuebingen.de/archive/openms/Documentation/nightly/html/TOPP_ProteinInference.html
input:
  - consus_file:
      type: file
      description: |
        identification results.
      pattern: "*.{idXML,consensusXML}"
output:
  - protein_inference:
      type: file
      description: |
        identification results with scored/grouped proteins.
      pattern: "*.consensusXML"
  - log:
      type: file
      description: log file
      pattern: "*.log"
  - version:
      type: file
      description: File containing software version
      pattern: "versions.yml"
authors:
  - "@daichengxin"
