name: searchenginecomet
description: Identifies peptides in MS/MS spectra via Comet.
keywords:
  - identification
  - OpenMS
  - comet
tools:
  - CometAdapter:
      description: |
        Identifies peptides in MS/MS spectra via Comet.
      homepage: https://abibuilder.cs.uni-tuebingen.de/archive/openms/Documentation/nightly/html/TOPP_CometAdapter.html
      documentation: https://abibuilder.cs.uni-tuebingen.de/archive/openms/Documentation/nightly/html/TOPP_CometAdapter.html
input:
  - meta:
      type: map
      description: Groovy Map containing sample information
  - mzml_file:
      type: file
      description: Input profile data file.
      pattern: "*.mzML"
  - database:
      type: file
      description: fasta file
      pattern: "*.{fasta,fa}"
output:
  - meta:
      type: map
      description: Groovy Map containing sample information
  - id_files_comet:
      type: file
      description: Output file
      pattern: "*.idXML"
  - log:
      type: file
      description: log file
      pattern: "*.log"
  - version:
      type: file
      description: File containing software version
      pattern: "versions.yml"
authors:
  - "@daichengxin"
