name: searchenginemsgf
description: the MS-GF+ protein identification (database search) engine.
keywords:
  - identification
  - OpenMS
  - msgf
tools:
  - MSGFPlusAdapter:
      description: |
        Adapter for the MS-GF+ protein identification (database search) engine.
      homepage: https://abibuilder.cs.uni-tuebingen.de/archive/openms/Documentation/nightly/html/TOPP_MSGFPlusAdapter.html
      documentation: https://abibuilder.cs.uni-tuebingen.de/archive/openms/Documentation/nightly/html/TOPP_MSGFPlusAdapter.html
input:
  - meta:
      type: map
      description: Groovy Map containing sample information
  - mzml_file:
      type: file
      description: Input profile data file.
      pattern: "*.mzML"
  - database:
      type: file
      description: fasta file
      pattern: "*.{fasta,fa}"
output:
  - meta:
      type: map
      description: Groovy Map containing sample information
  - id_files_msgf:
      type: file
      description: Output file
      pattern: "*.idXML"
  - log:
      type: file
      description: log file
      pattern: "*.log"
  - version:
      type: file
      description: File containing software version
      pattern: "versions.yml"
authors:
  - "@daichengxin"
