name: openmspeakpicker
description: Finds mass spectrometric peaks in profile mass spectra. I.e., converts spectra in profile mode to centroided.
keywords:
  - peak
  - OpenMS
tools:
  - PeakPickerHiRes:
      description: |
        A tool for peak detection in profile data. Executes the peak picking with high_res algorithm.
      homepage: https://abibuilder.cs.uni-tuebingen.de/archive/openms/Documentation/nightly/html/TOPP_PeakPickerHiRes.html
      documentation: https://abibuilder.cs.uni-tuebingen.de/archive/openms/Documentation/nightly/html/TOPP_PeakPickerHiRes.html
input:
  - meta:
      type: map
      description: Groovy Map containing sample information
  - mzml_file:
      type: file
      description: Input profile data file.
      pattern: "*.mzML"
output:
  - meta:
      type: map
      description: Groovy Map containing sample information
  - mzmls_picked:
      type: file
      description: Output peak file
  - log:
      type: file
      description: log file
      pattern: "*.log"
  - version:
      type: file
      description: File containing software version
      pattern: "versions.yml"
authors:
  - "@daichengxin"
