name: "picard_renamesampleinvcf"
description: changes name of sample in the vcf file
keywords:
  - picard
  - picard/renamesampleinvcf
tools:
  - "picard":
      description: |
        A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS)
        data and formats such as SAM/BAM/CRAM and VCF.
      homepage: https://broadinstitute.github.io/picard/
      documentation: https://broadinstitute.github.io/picard/
      tool_dev_url: "https://github.com/broadinstitute/picard"

      licence: "['MIT']"

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - vcf:
      type: file
      description: VCF file
      pattern: "*.{vcf,vcf.gz}"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - vcf:
      type: file
      description: VCF file
      pattern: "*.{vcf,vcf.gz}"

authors:
  - "@Lucpen"
