name: hmtnote_annotate
description: Human mitochondrial variants annotation using HmtVar. Contains .plk file with annotation, so can be run offline
keywords:
  - hmtnote
  - mitochondria
  - annotation
tools:
  - hmtnote:
      description: Human mitochondrial variants annotation using HmtVar.
      homepage: https://github.com/robertopreste/HmtNote
      documentation: https://hmtnote.readthedocs.io/en/latest/usage.html

      doi: "10.1101/600619"
      licence: ["MIT"]

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
  - vcf:
      type: file
      description: vcf file
      pattern: "*.vcf"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - vcf:
      type: file
      description: annotated vcf
      pattern: "*_annotated.vcf"

authors:
  - "@sysbiocoder"
