name: "cnvnator_convert2vcf"
description: convert2vcf.pl is command line tool to convert CNVnator calls to vcf format.
keywords:
  - cnvnator
  - cnv
  - cna
tools:
  - "cnvnator":
      description: "Tool for calling copy number variations."
      homepage: "https://github.com/abyzovlab/CNVnator"
      documentation: "https://github.com/abyzovlab/CNVnator/blob/master/README.md"
      tool_dev_url: "https://github.com/abyzovlab/CNVnator"
      licence: "['MIT']"
input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. `[ id:'test', single_end:false ]`
  - calls:
      type: file
      description: A tab file containing CNVnator calls
      pattern: "*.tab"
output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. `[ id:'test', single_end:false ]`
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - vcf:
      type: file
      description: CNVnator calls in vcf format
      pattern: "*.vcf"
authors:
  - "@ramprasadn"
maintainers:
  - "@ramprasadn"
