name: tabix_bgzip
description: Compresses/decompresses files
keywords:
  - compress
  - decompress
  - bgzip
  - tabix
tools:
  - bgzip:
      description: |
        Bgzip compresses or decompresses files in a similar manner to, and compatible with, gzip.
      homepage: https://www.htslib.org/doc/tabix.html
      documentation: http://www.htslib.org/doc/bgzip.html
      doi: 10.1093/bioinformatics/btp352
      licence: ["MIT"]
input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - input:
      type: file
      description: file to compress or to decompress
output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - output:
      type: file
      description: Output compressed/decompressed file
      pattern: "*."
  - gzi:
      type: file
      description: Optional gzip index file for compressed inputs
      pattern: "*.gzi"
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
authors:
  - "@joseespinosa"
  - "@drpatelh"
  - "@maxulysse"
  - "@nvnieuwk"
maintainers:
  - "@joseespinosa"
  - "@drpatelh"
  - "@maxulysse"
  - "@nvnieuwk"
