name: fusionreport
description: fusionreport
keywords:
  - sort
tools:
  - fusionreport:
      description: fusionreport
      homepage: https://github.com/matq007/fusion-report
      documentation: https://matq007.github.io/fusion-report/#/
      doi: "10.1101/011650"
      licence: ["GPL v3"]

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - reads:
      type: file
      description: FASTQ file
      pattern: "*.{fastq}*"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - reads:
      type: file
      description: FASTQ file
      pattern: "*.{fq.gz}"

authors:
  - "@praveenraj2018, @rannick"
