name: fusionreport_download
description: Build DB for fusionreport
keywords:
  - sort
tools:
  - fusioncatcher:
      description: Build DB for fusionreport
      homepage: https://github.com/ndaniel/fusioncatcher/
      documentation: https://github.com/ndaniel/fusioncatcher/blob/master/doc/manual.md
      tool_dev_url: https://github.com/ndaniel/fusioncatcher/
      doi: "10.1101/011650"
      licence: ["GPL v3"]

input:
  - username:
      type: value
      description: Organism for which the data is downloaded from Ensembl database and built
      pattern: "*"
  - passwd:
      type: value
      description: Organism for which the data is downloaded from Ensembl database and built
      pattern: "*"

output:
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - reference:
      type: directory
      description: directory containing the genome resource files required for fusioncatcher
      pattern: "fusioncatcher-genome"

authors:
  - "@praveenraj2018"
