name: kallisto_index
description: Create kallisto index
keywords:
  - index
tools:
  - kallisto:
      description: Quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.
      homepage: https://pachterlab.github.io/kallisto/
      documentation: https://pachterlab.github.io/kallisto/manual
      tool_dev_url: https://github.com/pachterlab/kallisto

      licence: ["BSD-2-Clause"]

input:
  - fasta:
      type: file
      description: genome fasta file
      pattern: "*.{fasta}"

output:
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - idx:
      type: index
      description: Kallisto genome index
      pattern: "*.idx"

authors:
  - "@ggabernet"
