name: fusioninspector
description: Validation of Fusion Transcript Predictions
keywords:
  - fusioninspector
tools:
  - fusioninspector:
      description: Validation of Fusion Transcript Predictions
      homepage: https://github.com/FusionInspector/FusionInspector
      documentation: https://github.com/FusionInspector/FusionInspector/wiki
      tool_dev_url: https://github.com/FusionInspector/FusionInspector
      doi: 10.1101/2021.08.02.454639"
      licence: https://github.com/FusionInspector/FusionInspector/blob/master/LICENSE.txt

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - reads:
      type: file
      description: FASTQ file
      pattern: "*.{fastq*}"
  - reference:
      type: directory
      description: Path to ctat references
      pattern: "*"

output:
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - reference:
      type: directory
      description: Genome resource path
      pattern: "*"

authors:
  - "@rannick"
