/*
 * -------------------------------------------------
 *  Nextflow config file for running tests
 * -------------------------------------------------
 * Defines bundled input files and everything required
 * to run a fast and simple test. Use as follows:
 *   nextflow run nf-core/rnaseq -profile test
 */

params {
  config_profile_name = 'Test profile'
  config_profile_description = 'Minimal test dataset to check pipeline function'
  // Limit resources so that this can run CI
  max_cpus = 2
  max_memory = 6.GB
  max_time = 48.h
  
  // Input data
  singleEnd = true
  readPaths = [
    ['SRR4238351', ['https://github.com/nf-core/test-datasets/raw/rnaseq/testdata/SRR4238351_subsamp.fastq.gz']],
    ['SRR4238355', ['https://github.com/nf-core/test-datasets/raw/rnaseq/testdata/SRR4238355_subsamp.fastq.gz']],
    ['SRR4238359', ['https://github.com/nf-core/test-datasets/raw/rnaseq/testdata/SRR4238359_subsamp.fastq.gz']],
    ['SRR4238379', ['https://github.com/nf-core/test-datasets/raw/rnaseq/testdata/SRR4238379_subsamp.fastq.gz']],
  ]
  // Genome references
  fasta = 'https://github.com/nf-core/test-datasets/raw/rnaseq/reference/genome.fa'
  gtf = 'https://github.com/nf-core/test-datasets/raw/rnaseq/reference/genes.gtf'
  gff = 'https://github.com/nf-core/test-datasets/raw/rnaseq/reference/genes.gff'
  transcript_fasta = 'https://github.com/nf-core/test-datasets/raw/rnaseq/reference/transcriptome.fasta'
}
