# nf-core/viralrecon bug report

Hi there!

Thanks for telling us about a problem with the pipeline.
Please delete this text and anything that's not relevant from the template below:

## Describe the bug

A clear and concise description of what the bug is.

## Steps to reproduce

Steps to reproduce the behaviour:

1. Command line: `nextflow run ...`
2. See error: _Please provide your error message_

## Expected behaviour

A clear and concise description of what you expected to happen.

## System

- Hardware: <!-- [e.g. HPC, Desktop, Cloud...] -->
- Executor: <!-- [e.g. slurm, local, awsbatch...] -->
- OS: <!-- [e.g. CentOS Linux, macOS, Linux Mint...] -->
- Version <!-- [e.g. 7, 10.13.6, 18.3...] -->

## Nextflow Installation

- Version: <!-- [e.g. 19.10.0] -->

## Container engine

- Engine: <!-- [e.g. Conda, Docker or Singularity] -->
- version: <!-- [e.g. 1.0.0] -->
- Image tag: <!-- [e.g. nfcore/viralrecon:1.0.0] -->

## Additional context

Add any other context about the problem here.
