/*
========================================================================================
    Nextflow config file for running full-size tests
========================================================================================
    Defines input files and everything required to run a full size pipeline test. 
    
    Use as follows:
        nextflow run nf-core/viralrecon -profile test_full_nanopore,<docker/singularity>

----------------------------------------------------------------------------------------
*/

params {
    config_profile_name        = 'Full test profile for nanopore data'
    config_profile_description = 'Full test dataset to check pipeline function'

    // Input data for full test of amplicon analysis
    platform           = 'nanopore'
    input              = 's3://nf-core-awsmegatests/viralrecon/input_data/20210205_1526_X4_FAP51364_21fa8135/samplesheet.csv'
    fastq_dir          = 's3://nf-core-awsmegatests/viralrecon/input_data/20210205_1526_X4_FAP51364_21fa8135/fastq_pass/'
    fast5_dir          = 's3://nf-core-awsmegatests/viralrecon/input_data/20210205_1526_X4_FAP51364_21fa8135/fast5_pass/'
    sequencing_summary = 's3://nf-core-awsmegatests/viralrecon/input_data/20210205_1526_X4_FAP51364_21fa8135/sequencing_summary.txt'
    
    // Genome references
    genome             = 'MN908947.3'
    primer_set_version = 3

    // Other parameters
    artic_minion_medaka_model = 's3://nf-core-awsmegatests/viralrecon/input_data/20210205_1526_X4_FAP51364_21fa8135/r941_min_high_g360_model.hdf5'
}