Workflows

What is a Workflow?

2 Workflows matching the given criteria: (Clear all filters)

Tool:

CUT&RUN data analysis workflow. It uses fastQC, trim adapters with Trim Galore!, map with Bowtie2, filter the BAM and mark duplicates. Peaks are called with MACS2 and peaks from both replicates are intersected and then intersected to the ChIP peaks. Finally MEME ChIP is run to get the motifs.

Associated Tutorial

This workflows is part of the tutorial CUT&RUN data analysis, ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

Created: 25th Jun 2024 at 11:04, Last updated: 24th Feb 2025 at 13:07

Tutorial CLIPseq Explorer Demultiplexed PEAKachu eCLIP Hg38

Galaxy Training Network

CLIP-Seq data analysis from pre-processing to motif detection

Associated Tutorial

This workflows is part of the tutorial Tutorial CLIPseq Explorer Demultiplexed PEAKachu eCLIP Hg38 , available in the GTN

Thanks to...

Tutorial Author(s): Florian Heyl, [Daniel ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

Created: 25th Jun 2024 at 11:19, Last updated: 25th Jun 2024 at 11:19

Workflows

Filters ×

Associated Tutorial

Associated Tutorial

Thanks to...

Filters