16s adna alignment amplicon-sequencing analytical chemistry ancientdna annotation ARTIC assembly atac-seq b-cell bacterial-genomes bash bibliometrics binning Bioinformatics bisulfite-sequencing C/C++ cage cage-seq cageseq-data cancer cat Cheminformatics chip chip-seq chromatin-accessibiity chromatin-immunoprecipitation clinical common workflow language computer science cosifer covid-19 covid19 covid19.galaxyproject.org crispr crispr-cas9 Cytoscape Data Management data-independent-proteomics deep-variant denovo denovo-assembly dia-proteomics dna dna-methylation emergen_validated example gatk gene-expression genome-assembly Genomics google GTN guide-seq HiFi hla hla-typing hybrid-assembly immcantation immune immunology iwc k-mer kmer kmer-counting kmer-frequency-count KNIME macs2 mapping Mass spectrometry mass-spectrometry MaxQuant Metabolomics metagenomics methyl-seq Molecular Biology nanopore nanopore-sequencing nf-core ngs-pipeline NormalyzerDE ONT optitype pathogen-genomics peak-calling pediatric peptides personalized-medicine population-genetics Proteomics purge_dups Python qiime R RetroPath reverse rna rrna samtools SARS-CoV-2 screening SDRF shotgun-ms Software Engineering Taverna variant-annotation variant-calling workflow composition Workflows