This is the workflow for the Clustering 3K PBMCs with Seurat tutorial if you are using the separate preprocessing tools (NormalizeData, FindVariableFeatures, ScaleData).
Associated Tutorial
This workflows is part of the tutorial Clustering 3K PBMCs with Seurat, available in the GTN
Features
- Includes [Galaxy Workflow ...
This is the workflow for the Clustering 3K PBMCs with Seurat tutorial if you use SCTransform for preprocessing.
Associated Tutorial
This workflows is part of the tutorial Clustering 3K PBMCs with Seurat, available in the GTN
Features
- Includes Galaxy Workflow Tests ...
Updated tool versions Aug 24 2022
Associated Tutorial
This workflows is part of the tutorial Filter, plot and explore single-cell RNA-seq data with Scanpy, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy ...
This workflow creates an ESet object from scRNA metadata file and EBI SCXA retrieveal
Associated Tutorial
This workflows is part of the tutorial MuSiC-Deconvolution: Data generation | sc | matrix + ESet, available in the GTN
Features
- Uses subworkflows ...
This workflow generates from only an EBI SCXA reference the metadata for creating an ESet object
Associated Tutorial
This workflows is part of the tutorial MuSiC-Deconvolution: Data generation | sc | metadata, available in the GTN
Thanks to...
Tutorial Author(s): Wendi Bacon, ...
Associated Tutorial
This workflows is part of the tutorial Inferring Trajectories with Scanpy Tutorial Workflow, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): [Marisa ...
This workflow creates bulk ESet objects from uploaded raw matrix & metadata files
Associated Tutorial
This workflows is part of the tutorial MuSiC-Deconvolution: Data generation | bulk | ESet, available in the GTN
Features
- Uses subworkflows ...
This workflow runs 3 comparisons using MuSiC Deconvolution compare: where datasets cell compositions are inferred from a reference containing healthy and diseased cells; where diseased are inferred from disease and healthy from healthy; and where both diseased and healthy are inferred from a healthy reference.
Associated Tutorial
This workflows is part of the tutorial MuSiC-Deconvolution: Compare, ...
Updated tool versions Aug 24 2022
Associated Tutorial
This workflows is part of the tutorial CS3_Filter, Plot and Explore Single-cell RNA-seq Data, available in the GTN
Thanks to...
Tutorial Author(s): Wendi Bacon
Tutorial Contributor(s): ...
