Inferring Trajectories with Scanpy Tutorial Workflow
1.0

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Workflow Type: Galaxy

Associated Tutorial

This workflows is part of the tutorial Inferring Trajectories with Scanpy Tutorial Workflow, available in the GTN

Features

Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): Marisa Loach, Wendi Bacon, Julia Jakiela, Mehmet Tekman

Tutorial Contributor(s): Pavankumar Videm, Helena Rasche

Workflow Author(s): Marisa Loach

SEEK ID: https://dev.workflowhub.eu/workflows/1238?version=1

Inputs

ID	Name	Description	Type
Input Anndata	Input Anndata	n/a	File

Steps

ID	Name	Description
1	Manipulate AnnData	toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.7.5+galaxy1
2	Scanpy RunFDG	toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_fdg/scanpy_run_fdg/1.8.1+galaxy9
3	Scanpy PlotEmbed	toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_embed/scanpy_plot_embed/1.8.1+galaxy9
4	Scanpy DiffusionMap	toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_diffmap/scanpy_run_diffmap/1.8.1+galaxy9
5	Scanpy ComputeGraph	toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.8.1+galaxy9
6	Scanpy RunFDG	toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_fdg/scanpy_run_fdg/1.8.1+galaxy9
7	Scanpy PlotEmbed	toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_embed/scanpy_plot_embed/1.8.1+galaxy9
8	Scanpy PAGA	toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_paga/scanpy_run_paga/1.8.1+galaxy9
9	Scanpy PlotTrajectory	toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_trajectory/scanpy_plot_trajectory/1.8.1+galaxy9
10	Scanpy RunFDG	toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_fdg/scanpy_run_fdg/1.8.1+galaxy9
11	Scanpy PlotEmbed	toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_embed/scanpy_plot_embed/1.8.1+galaxy9
12	Scanpy PlotEmbed	toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_embed/scanpy_plot_embed/1.8.1+galaxy9
13	Scanpy PlotEmbed	toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_embed/scanpy_plot_embed/1.8.1+galaxy9
14	Final Anndata with Trajectory and DPT	toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_dpt/scanpy_run_dpt/1.8.1+galaxy9
15	Scanpy PlotEmbed	toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_embed/scanpy_plot_embed/1.8.1+galaxy9

Version History

1.0 (earliest) Created 25th Jun 2024 at 11:14 by Helena Rasche

Added/updated 4 files

Open master 54c0ecc

Creators and Submitter

Creators

Not specified

Submitter

Helena Rasche

Discussion Channel

GTN Matrix

Tool

SCANPY

License

Creative Commons Attribution 4.0 International

Activity

Views: 147 Downloads: 49

Created: 25th Jun 2024 at 11:14

Last updated: 25th Jun 2024 at 11:14

Inferring Trajectories with Scanpy Tutorial Workflow 1.0