General
Web page: Not specified
Funding details: Related items
Teams: MGnify, nf-core, Workflow Hub Administration, Galaxy COVID-19, Testing, Defragmentation training school
Organizations: University of Manchester, Working from Home
Teams: Testing
Organizations: Swiss Institute of Bioinformatics
https://orcid.org/0000-0003-1361-7301
Teams: Defragmentation training school
Organizations: University of Muenster
https://orcid.org/0000-0003-4906-6724
Teams: test 705c32e038d0
Organizations: SGN
Teams: Submission Tutorial
Organizations: University of Bath
A team for learners to submit sample workflows while learning about WorkflowHub and how to correctly package their workflows to be shared on the system.
Space: General
Public web page: Not specified
Space: General
Public web page: Not specified
Space: General
Public web page: Not specified
The images are two time points of a time lapse experiment where the INCENP gene was subjected to siRNA knock-down. The data are taken from the published mitocheck screen. In this screen the authors carried out a genome-wide phenotypic profiling of each of the ~21,000 human protein-coding genes by two-day live imaging of fluorescently labelled chromosomes.
Creator: [email protected]
Submitter: [email protected]
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Creator: Finn Bacall
Submitter: Finn Bacall
Abstract (Expand)
Authors: D. Holtig, G. Reiner
Date Published: 2nd Mar 2022
Publication Type: Journal
Abstract
Authors: E. Rohmann, M. Wellenbrock, S. Hoffmann
Date Published: 1st Sep 1979
Publication Type: Journal
Abstract (Expand)
Authors: M. R. Keighley, P. Asquith, J. A. Edwards, J. Alexander-Williams
Date Published: 1st Oct 1975
Publication Type: Journal
Abstract
Authors: Newcomer M, Hubbard S
Date Published: No date defined
Publication Type: Journal
Abstract
Editor:
Date Published: No date defined
Publication Type: Journal
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Creator: Finn Bacall
Submitter: Finn Bacall
This workflow assembles short reads by running the obsolete Velvet assembler. It performs the same assembly on every sample with different k-mer length settings, and reports the longest contig in each case.
Demo de-novo assembly workflow
This workflow assembles short reads by running the obsolete Velvet assembler. It performs the same assembly on every sample with different k-mer length settings, and reports the longest contig in each case.
CUT&RUN data analysis workflow. It uses fastQC, trim adapters with Trim Galore!, map with Bowtie2, filter the BAM and mark duplicates. Peaks are called with MACS2 and peaks from both replicates are intersected and then intersected to the ChIP peaks. Finally MEME ChIP is run to get the motifs.
Associated Tutorial
This workflows is part of the tutorial CUT&RUN data analysis, ...
Reference-based RNA-Seq data analysis
Associated Tutorial
This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Uses ...
Reference-based RNA-Seq data analysis
Associated Tutorial
This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Bérénice Batut, ...
Insert pdf doc here
Collection of workflows using data from the Image Data Resource (IDR) https://idr.openmicroscopy.org/
