SEEK ID: https://dev.workflowhub.eu/people/1
Location:
United Kingdom
Expertise: Not specified
Tools: Not specified
ORCID: Not specified

Related items
- Spaces (1)
- Teams (5)
- Organizations (1)
- Data files (0+1)
- SOPs (0+1)
- Workflows (38+5)
- Collections (1+1)
Teams: Testing, Finn's test team, PNDB, LifeMonitorDev
Web page: Not specified
A project for miscellaneous testing of Workflow Hub.
Space: General
Public web page: Not specified
Organisms: Not specified
Initial analysis of COVID-19 data using Galaxy, BioConda and public research infrastructures
Space: This Team is not associated with a Space
Public web page: https://covid19.galaxyproject.org
Organisms: Not specified
A community effort to collect a curated set of analysis pipelines built using Nextflow.
Space: This Team is not associated with a Space
Public web page: https://nf-co.re/
Organisms: Not specified
MGnify (formerly known as EBImetagenomics) is a free resource for the assembly, analysis, archiving and browsing all types of microbiome derived sequence data.
Space: This Team is not associated with a Space
Public web page: https://www.ebi.ac.uk/metagenomics/
Organisms: Not specified
Preprocessing of raw SARS-CoV-2 reads
The raw reads available so far are generated from bronchoalveolar lavage fluid (BALF) and are metagenomic in nature: they contain human reads, reads from potential bacterial co-infections as well as true COVID-19 reads.
Live Resources
| usegalaxy.org | usegalaxy.eu | usegalaxy.org.au | usegalaxy.be |
|:--------:|:------------:|:------------:|:------------:|
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Evolutionary Analysis
Live Resources
usegalaxy.org
usegalaxy.eu
usegalaxy.org.au
usegalaxy.be
What's the point?
Wu et al. showed recombination between COVID-19 and bat coronaviruses located within the S-gene. We want to confirm this observation and provide a publicly accessible workflow for recombination detection.
In previous coronavirus outbreaks (SARS), retrospective analyses determined that adaptive substitutions might have occurred in the S-protein Zhang et al., e.g., related to ACE2 receptor
...
Analysis of S-protein polymorphism
Live Resources
usegalaxy.org
usegalaxy.eu
usegalaxy.org.au
usegalaxy.be
What's the point?
In the previous portion of this study we found a non-synonymous polymorphism within the S-gene. In this section we are trying to interpret its possible effect.
Outline
Obtain coding sequences of S proteins from a diverse group of coronaviruses. Generate amino acid alignment to assess conservation of the polymorphic location.
Input
Downloaded CDS sequences of coronavirus
...
nf-core workflows