Finn Bacall
SEEK ID: https://dev.workflowhub.eu/people/1
Location:
United Kingdom
ORCID: Not specified
Joined: 20th Nov 2019
Expertise: Not specified
Tools: Not specified
Roles
Admin
Team Administrator
Space Administrator
Their tagsRelated items
Teams: Testing, Finn's test team, PNDB, LifeMonitorDev, iPC: individualizedPaediatricCure, test, Test Team, Australian BioCommons Dev, opscientia, V-pipe, UX study leave, DALiuGE workflows, Team1, UX study, My Fancy Team, Team UX Study11, My team, ux study team, UX study koehorst, Team Koehorst, UX Study (satra), Steve's UX Study Test Team, TestSaandra, KJ-workflow-test, NewTeam, team, UXStudy, A Team, UX study K, UXStudy99, Study team, Another new team, UX study2, Team 20220225, my new team, UX Study AU, Testing_proteomics, A test space (KKH), Pleiade, QSM4SENIOR, IGG-Bioinfo, Defragmentation training school, FWCC-D@HZDR, Submission Tutorial, Testing team
Web page: Not specified
Concerning the administration of the Workflow Hub.
Space: This Team is not associated with a Space
Public web page: Not specified
Start date: 28th Feb 2020
Space: General
Public web page: Not specified
A project for miscellaneous testing of Workflow Hub.
Space: General
Public web page: Not specified
MGnify (formerly known as EBImetagenomics) is a free resource for the assembly, analysis, archiving and browsing all types of microbiome derived sequence data.
Space: This Team is not associated with a Space
Public web page: https://www.ebi.ac.uk/metagenomics/
Initial analysis of COVID-19 data using Galaxy, BioConda and public research infrastructures
Space: This Team is not associated with a Space
Public web page: https://covid19.galaxyproject.org
Abstract
Authors: E. Rohmann, M. Wellenbrock, S. Hoffmann
Date Published: 1st Sep 1979
Publication Type: Journal
Abstract
Author: M. H. Rubinstein
Date Published: 1st Dec 1976
Publication Type: Journal
Abstract (Expand)
Authors: S. C. Scheiber, H. Jr Ziesat
Date Published: 11th Mar 1976
Publication Type: Journal
Abstract (Expand)
Authors: M. R. Keighley, P. Asquith, J. A. Edwards, J. Alexander-Williams
Date Published: 1st Oct 1975
Publication Type: Journal
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Creator: Finn Bacall
Submitter: Finn Bacall
Visualisation with Circos
my-example-workflow
An example workflow repository.
workflow-test-fixture
A workflow and associated files for use in SEEK's tests :)
Tests This workflow take as input a collection of paired fastq. It will remove bad quality and adapters with cutadapt. Map with Bowtie2 end-to-end. Will remove reads on MT and unconcordant pairs and pairs with mapping quality below 30 and PCR duplicates. Will compute the pile-up on 5' +- 100bp. Will call peaks and count the number of reads falling in the 1kb region centered on the summit. Will plot the number of reads for each fragment length.
