Finn Bacall

About Finn Bacall:

No description specified

SEEK ID: https://dev.workflowhub.eu/people/1

Location: United Kingdom

Expertise: Not specified

Tools: Not specified

ORCID: Not specified

Their tags

16s adna amplicon-sequencing ancientdna annotation ARTIC assembly atac-seq b-cell bacterial-genomes binning Bioinformatics bisulfite-sequencing cage cage-seq cageseq-data cat chip chip-seq chromatin-accessibiity chromatin-immunoprecipitation clinical covid-19 covid19.galaxyproject.org crispr crispr-cas9 data-independent-proteomics deep-variant denovo denovo-assembly dia-proteomics dna dna-methylation gene-expression genome-assembly google guide-seq hla hla-typing hybrid-assembly immcantation immune immunology k-mer kmer kmer-counting kmer-frequency-count macs2 mass-spectrometry metagenomics methyl-seq nanopore nanopore-sequencing nf-core ngs-pipeline ONT optitype pathogen-genomics peak-calling peptides personalized-medicine population-genetics Proteomics qiime RetroPath rna rrna shotgun-ms variant-annotation variant-calling

Team positions

Other Teams: MGnify (University of Manchester) ; nf-core (University of Manchester) ; Workflow Hub Administration (University of Manchester) ; Galaxy COVID-19 (University of Manchester) ; Testing (University of Manchester) ; Testing (Working from Home)

Related items

General

No description specified

Teams: Testing, Finn's test team, PNDB, LifeMonitorDev, iPC: individualizedPaediatricCure, test, Test Team, Australian BioCommons Dev

Web page: Not specified

Testing

A project for miscellaneous testing of Workflow Hub.

Space: General

Public web page: Not specified

Organisms: Not specified

Workflow Hub Administration

Concerning the administration of the Workflow Hub.

Space: This Team is not associated with a Space

Public web page: Not specified

Start date: 28th Feb 2020

Organisms: Not specified

Galaxy COVID-19

Initial analysis of COVID-19 data using Galaxy, BioConda and public research infrastructures

Space: This Team is not associated with a Space

Public web page: https://covid19.galaxyproject.org

Organisms: Not specified

nf-core

A community effort to collect a curated set of analysis pipelines built using Nextflow.

Space: This Team is not associated with a Space

Public web page: https://nf-co.re/

Organisms: Not specified

MGnify

MGnify (formerly known as EBImetagenomics) is a free resource for the assembly, analysis, archiving and browsing all types of microbiome derived sequence data.

Space: This Team is not associated with a Space

Public web page: https://www.ebi.ac.uk/metagenomics/

Organisms: Not specified

University of Manchester

Country: United Kingdom

City: Manchester

Web page: Not specified

Working from Home

Country: United Kingdom

City: Manchester

Web page: Not specified

1 hidden item

[Electroencephalographic early and late findings in poisoning in childhood].

Testing

Abstract

Not specified

Authors: E. Rohmann, M. Wellenbrock, S. Hoffmann

Date Published: 1st Sep 1979

Publication Type: Journal

PubMed ID: 513515

Citation: Kinderarztl Prax. 1979 Sep;47(9):475-82.

Created: 9th Aug 2021 at 11:38

A new granulation method for compressed tablets [proceedings].

Workflow Hub Administration

Abstract

Not specified

Author: M. H. Rubinstein

Date Published: 1st Dec 1976

Publication Type: Journal

PubMed ID: 12345

Citation: J Pharm Pharmacol. 1976 Dec;28 Suppl:67P.

Created: 1st Jun 2021 at 16:02

Concat two files 😂😂😂

Testing

workflow-test-fixture

A workflow and associated files for use in SEEK's tests

Type: Galaxy

Creator: Finn Bacall

Submitter: Finn Bacall

Created: 18th Jun 2021 at 15:34, Last updated: 25th Jun 2021 at 16:55

sort-and-change-case

Testing

sort lines and change text to upper case

Type: Galaxy

Creators: None

Submitter: Finn Bacall

Download

Created: 16th Jun 2021 at 15:04

Finn's Taverna Workflow

Testing

Stable

Name of the application: Adapter removal hello world
Name of the application: Mapping and bam sorting goodbye world

1. Name of the application: Adapter removal hello world 2. Name of the application: Mapping and bam sorting goodbye world

Type: Taverna

Creators: None

Submitter: Finn Bacall

DOI: 10.81082/dev-workflowhub.workflow.136.1

Download

Created: 10th Dec 2020 at 15:30, Last updated: 19th Feb 2021 at 11:04

1 - read pre-processing

Testing

Preprocessing of raw SARS-CoV-2 reads

The raw reads available so far are generated from bronchoalveolar lavage fluid (BALF) and are metagenomic in nature: they contain human reads, reads from potential bacterial co-infections as well as true COVID-19 reads.