16s adna amplicon-sequencing ancientdna annotation ARTIC assembly atac-seq ATACseq b-cell bacterial-genomes binning Bioinformatics bioinformatics-pipeline bisulfite-sequencing cage cage-seq cageseq-data cat chip chip-seq chromatin-accessibiity chromatin-immunoprecipitation clinical covid-19 covid19.galaxyproject.org crispr crispr-cas9 data-independent-proteomics deep-variant denovo denovo-assembly dia-proteomics dna dna-methylation gene-expression genome-assembly google guide-seq hla hla-typing hybrid-assembly immcantation immune immunology k-mer kmer kmer-counting kmer-frequency-count macs2 mass-spectrometry metagenomics methyl-seq nanopore nanopore-sequencing nextflow nf-core ngs-pipeline ONT optitype pathogen-genomics peak-calling peptides personalized-medicine population-genetics Proteomics qiime reproducibility reproducible-research RetroPath rna rna-seq rrna shotgun-ms synthetic-biology test variant-annotation variant-calling visualisation workflow