Assembly and intrahost/low-frequency variant calling for viral samples
Type: Nextflow
Creators: Patel H, Sarai Varona and Sara Monzon, Varona S and Monzon S
Submitter: WorkflowHub Sandbox Bot
Assembly, binning and annotation of metagenomes
Type: Nextflow
Creators: Hadrien Gourlé, No author provided, Daniel Straub, Sabrina Krakau
Submitter: WorkflowHub Sandbox Bot
Hybrid genome assembly.
Introduction
The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker containers making installation trivial and results highly reproducible.
Documentation
The nf-core/denovohybrid pipeline comes with documentation about the pipeline, found in the docs/ directory:
Installation Pipeline configuration
Local installation Adding your own system config Reference genomes
Running the ...
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