nfcore/atacseq is a bioinformatics analysis pipeline used for ATAC-seq data.
The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker containers making installation trivial and results highly reproducible.
Raw read QC (FastQC)
Adapter trimming (Trim Galore!)
Mark duplicates (picard)
Merge alignments from multiple libraries of the same sample (picard)
Creator: Harshil Patel
Submitter: Finn Bacall