1 item tagged with 'kmer-frequency-count'.
nf-kmer-similarity
This is a Nextflow workflow for running k-mer similarity
Usage
With a samples.csv file:
nextflow run czbiohub/nf-kmer-similarity --outdir s3://olgabot-maca/nf-kmer-similarity/ --samples samples.csv
With R1, R2 read pairs:
nextflow run czbiohub/nf-kmer-similarity --outdir s3://olgabot-maca/nf-kmer-similarity/ \
--readpairs 's3://olgabot-maca/sra/homosapiens/smartseq2quartzseq/{R1,R2}.fastq.gz,s3://olgabot-maca/sra/daniorerio/smart-seq/wholekidneymarrow_prjna393431/*{1,2}.fastq.gz'
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Created: 25th Feb 2020 at 11:08, Last updated: 25th Feb 2020 at 15:19