1 item tagged with 'hla-typing'.
Precision HLA typing from next-generation sequencing data using OptiType.
Table of Contents
Introduction
Quick Start
With Docker
With Singularity
Documentation
Pipeline DAG
Input fastq
Input bam
Credits
Introduction
OptiType is a HLA genotyping algorithm based on integer linear programming. Reads of whole exome/genome/transcriptome sequencing data are mapped against a reference of known MHC class I alleles. To produce accurate 4-digit HLA genotyping predictions, all major and minor HLA-I loci are
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Created: 25th Feb 2020 at 11:06