Workflows

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40 Workflows visible to you, out of a total of 48

workflow-test-fixture

A workflow and associated files for use in SEEK's tests

Type: Galaxy

Creator: Finn Bacall

Submitter: Finn Bacall

sort lines and change text to upper case

Type: Galaxy

Creators: None

Submitter: Finn Bacall

Stable
  1. Name of the application: Adapter removal hello world
  2. Name of the application: Mapping and bam sorting goodbye world

1. Name of the application: Adapter removal hello world 2. Name of the application: Mapping and bam sorting goodbye world

Type: Taverna

Creators: None

Submitter: Finn Bacall

DOI: 10.81082/dev-workflowhub.workflow.136.1

Preprocessing of raw SARS-CoV-2 reads

The raw reads available so far are generated from bronchoalveolar lavage fluid (BALF) and are metagenomic in nature: they contain human reads, reads from potential bacterial co-infections as well as true COVID-19 reads.

Live Resources

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Galaxy workflow

...

Type: Galaxy

Creators: None

Submitter: Finn Bacall

Ignore

Type: Unrecognized workflow type

Creator: Finn Bacall

Submitter: Finn Bacall

Evolutionary Analysis

Live Resources

usegalaxy.org usegalaxy.eu usegalaxy.org.au usegalaxy.be

What's the point?

Wu et al. showed recombination between COVID-19 and bat coronaviruses located within the S-gene. We want to confirm this observation and provide a publicly accessible workflow for recombination detection.

In previous coronavirus outbreaks (SARS), retrospective analyses determined that adaptive substitutions might have occurred in the S-protein Zhang et al., e.g., related to ACE2 receptor ...

Type: Galaxy

Creator: Finn Bacall

Submitter: Finn Bacall

Analysis of S-protein polymorphism

Live Resources

usegalaxy.org usegalaxy.eu usegalaxy.org.au usegalaxy.be

What's the point?

In the previous portion of this study we found a non-synonymous polymorphism within the S-gene. In this section we are trying to interpret its possible effect.

Outline

Obtain coding sequences of S proteins from a diverse group of coronaviruses. Generate amino acid alignment to assess conservation of the polymorphic location.

Input

Downloaded CDS sequences of coronavirus ...

Type: Galaxy

Creator: Finn Bacall

Submitter: Finn Bacall

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