This pipeline is currenlty under development. The workflow is not yet finished.
nf-core/cageseq is a pipeline built for the analysis of CAGE-sequencing data.
Analysis steps consist of adapter and artefact trimming (cuatadapt), alignment to a reference (STAR) and CAGE tag counting.
Additionally, several quality control steps (FastQC, MultiQC) are included to allow for easy verification of results after a run.
The pipeline is built
Creator: Kevin Menden
Submitter: Finn Bacall