Quantitative shotgun MS proteomics as done in Lehtio lab
The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker / singularity containers making installation trivial and results highly reproducible.
The nf-core/ddamsproteomics pipeline comes with documentation about the pipeline, found in the docs/ directory:
Installation Pipeline configuration
Creator: Project author name (use a comma to separate multiple names).
Submitter: Finn Bacall