Version 1

Workflow Type: Nextflow


Quantitative shotgun MS proteomics as done in Lehtio lab

Build Status Nextflow

install with bioconda Docker Singularity Container available


The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker / singularity containers making installation trivial and results highly reproducible.


The nf-core/ddamsproteomics pipeline comes with documentation about the pipeline, found in the docs/ directory:

  1. Installation
  2. Pipeline configuration
  3. Running the pipeline
  4. Output and how to interpret the results
  5. Troubleshooting

Version History

Version 1 (earliest) Created 25th Feb 2020 at 11:04 by Finn Bacall

Added/updated 41 files

Open master 05ea6b9
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Views: 880   Downloads: 25

Created: 25th Feb 2020 at 11:04

Last updated: 25th Feb 2020 at 15:19

Last used: 16th Aug 2022 at 18:14

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