A fully reproducible and modern ancient DNA pipeline in Nextflow and with cloud support.

A fully reproducible ancient and modern DNA pipeline in Nextflow and with cloud support..

Introduction

nf-core/eager is a bioinformatics best-practice analysis pipeline for NGS sequencing based ancient DNA (aDNA) data analysis.

The pipeline uses Nextflow, a bioinformatics workflow tool. It pre-processes raw data from FASTQ inputs, aligns the reads and performs extensive general NGS and aDNA specific quality-control on the results. It comes with docker, singularity or conda containers making ...