A fully reproducible ancient and modern DNA pipeline in Nextflow and with cloud support..

Introduction

nf-core/eager is a bioinformatics best-practice analysis pipeline for NGS

sequencing based ancient DNA (aDNA) data analysis.

The pipeline uses Nextflow, a bioinformatics

workflow tool. It pre-processes raw data from FASTQ inputs, aligns the reads

and performs extensive general NGS and aDNA specific quality-control on the

results. It comes with docker, singularity or conda containers making

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