MuSiC-Deconvolution: Data generation | sc | metadata
1.0

Workflow Type: Galaxy

This workflow generates from only an EBI SCXA reference the metadata for creating an ESet object

Associated Tutorial

This workflows is part of the tutorial MuSiC-Deconvolution: Data generation | sc | metadata, available in the GTN

Thanks to...

Tutorial Author(s): Wendi Bacon, Mehmet Tekman

Tutorial Contributor(s): Marisa Loach

Workflow Author(s): Wendi Bacon, Mehmet Tekman

gtn star logo followed by the word workflows

Steps

ID Name Description
0 EBI SCXA Data Retrieval toolshed.g2.bx.psu.edu/repos/ebi-gxa/retrieve_scxa/retrieve_scxa/v0.0.1+galaxy1
1 Cut Cut1
2 Add line to file toolshed.g2.bx.psu.edu/repos/bgruening/add_line_to_file/add_line_to_file/0.1.0
3 Reformatting metadata columns Adjust this step as necessary toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regex1/1.0.2
4 Join two Datasets Experimental designs often include extra stuff (likely the barcodes not meeting the EBI pre-processing criteria), so this way we streamline down to only those barcodes in the barcodes file. join1
5 Advanced Cut Gets rid of the duplicated columns toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0

Outputs

ID Name Description Type
_anonymous_output_1 #main/_anonymous_output_1 n/a
  • File
_anonymous_output_2 #main/_anonymous_output_2 n/a
  • File
_anonymous_output_3 #main/_anonymous_output_3 n/a
  • File
_anonymous_output_4 #main/_anonymous_output_4 n/a
  • File
_anonymous_output_5 #main/_anonymous_output_5 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
  • File
_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File

Version History

1.0 (earliest) Created 25th Jun 2024 at 11:16 by Helena Rasche

Added/updated 4 files


Open master 0261b1f
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Views: 302   Downloads: 66

Created: 25th Jun 2024 at 11:16

Last updated: 25th Jun 2024 at 11:16

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