This workflow creates an ESet object from scRNA metadata file and EBI SCXA retrieveal
Associated Tutorial
This workflows is part of the tutorial MuSiC-Deconvolution: Data generation | sc | matrix + ESet, available in the GTN
Features
- Uses subworkflows ...
This workflow generates from only an EBI SCXA reference the metadata for creating an ESet object
Associated Tutorial
This workflows is part of the tutorial MuSiC-Deconvolution: Data generation | sc | metadata, available in the GTN
Thanks to...
Tutorial Author(s): Wendi Bacon, ...
Trajectory analysis using Monocle3, starting from 3 input files: expression matrix, gene and cell annotations
Associated Tutorial
This workflows is part of the tutorial Monocle3 workflow, available in the GTN
Thanks to...
Tutorial Author(s): Julia Jakiela ...
Preparing and filtering gene and cell annotations files and expression matrix to be passed as input for Monocle
Associated Tutorial
This workflows is part of the tutorial AnnData object to Monocle input files, available in the GTN
Thanks to...
Tutorial Author(s): Julia Jakiela ...
This workflow creates bulk ESet objects from uploaded raw matrix & metadata files
Associated Tutorial
This workflows is part of the tutorial MuSiC-Deconvolution: Data generation | bulk | ESet, available in the GTN
Features
- Uses subworkflows ...
Trajectory analysis using Monocle3, starting from AnnData
Associated Tutorial
This workflows is part of the tutorial Trajectory analysis using Monocle3 - full tutorial workflow, available in the GTN
Features
- Includes Galaxy Workflow Tests ...
This workflow runs 3 comparisons using MuSiC Deconvolution compare: where datasets cell compositions are inferred from a reference containing healthy and diseased cells; where diseased are inferred from disease and healthy from healthy; and where both diseased and healthy are inferred from a healthy reference.
Associated Tutorial
This workflows is part of the tutorial MuSiC-Deconvolution: Compare, ...
Updated tool versions Aug 24 2022
Associated Tutorial
This workflows is part of the tutorial CS3_Filter, Plot and Explore Single-cell RNA-seq Data, available in the GTN
Thanks to...
Tutorial Author(s): Wendi Bacon
Tutorial Contributor(s): ...
