Inferring Trajectories with Scanpy Tutorial Workflow
1

Workflow Type: Galaxy

Galaxy workflow

Inputs

ID Name Description Type
Input Anndata Input Anndata n/a
  • File

Steps

ID Name Description
1 Manipulate AnnData toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.7.5+galaxy1
2 Scanpy RunFDG toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_fdg/scanpy_run_fdg/1.8.1+galaxy9
3 Scanpy PlotEmbed toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_embed/scanpy_plot_embed/1.8.1+galaxy9
4 Scanpy DiffusionMap toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_diffmap/scanpy_run_diffmap/1.8.1+galaxy9
5 Scanpy ComputeGraph toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.8.1+galaxy9
6 Scanpy RunFDG toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_fdg/scanpy_run_fdg/1.8.1+galaxy9
7 Scanpy PlotEmbed toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_embed/scanpy_plot_embed/1.8.1+galaxy9
8 Scanpy PAGA toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_paga/scanpy_run_paga/1.8.1+galaxy9
9 Scanpy PlotTrajectory toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_trajectory/scanpy_plot_trajectory/1.8.1+galaxy9
10 Scanpy RunFDG toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_fdg/scanpy_run_fdg/1.8.1+galaxy9
11 Scanpy PlotEmbed toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_embed/scanpy_plot_embed/1.8.1+galaxy9
12 Scanpy PlotEmbed toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_embed/scanpy_plot_embed/1.8.1+galaxy9
13 Scanpy PlotEmbed toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_embed/scanpy_plot_embed/1.8.1+galaxy9
14 Final Anndata with Trajectory and DPT toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_dpt/scanpy_run_dpt/1.8.1+galaxy9
15 Scanpy PlotEmbed toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_embed/scanpy_plot_embed/1.8.1+galaxy9

Version History

1 (earliest) Created 22nd Apr 2024 at 11:20 by Helena Rasche

Added/updated 3 files


Open master b7f071d
help Creators and Submitter
Creators
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Additional credit

Marisa Loach

Submitter
Activity

Views: 398   Downloads: 91

Created: 22nd Apr 2024 at 11:20

Last updated: 22nd Apr 2024 at 11:20

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