workflow-automation

Associated Tutorial

This workflows is part of the tutorial vcf2lineage, available in the GTN

Thanks to...

Tutorial Author(s): Simon Bray, Wolfgang Maier ...

This workflow is created as part of a tutorial listed on GTN. The workflow shows the steps in human copy number variance detection using the Contrl_FREEC tool.

Associated Tutorial

This workflows is part of the tutorial Somatic-Variant-Discovery-from-WES-Data-Using-Control-FREEC, available in the GTN

Features

• Includes [Galaxy ...

Exome sequencing data analysis for diagnosing a genetic disease

Associated Tutorial

This workflows is part of the tutorial Exome Seq Training Full W Cached Ref, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

**Tutorial ...

Exome sequencing data analysis for diagnosing a genetic disease; short version starting from pre-mapped reads

Associated Tutorial

This workflows is part of the tutorial Exome Seq Training Pre-Mapped W Cached Ref, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Calling variants in diploid systems

Associated Tutorial

This workflows is part of the tutorial Diploid, available in the GTN

Thanks to...

Tutorial Author(s): Anton Nekrutenko, Nicola Soranzo ...

Calling variants in non-diploid systems

Associated Tutorial

This workflows is part of the tutorial Calling variants in non-diploid systems, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): [Anton ...

Trio Analysis using Synthetic Datasets from RD-Connect GPAP

Associated Tutorial

This workflows is part of the tutorial Trio Analysis Tutorial, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): [Jasper ...

Microbial Variant Calling

Associated Tutorial

This workflows is part of the tutorial Microbial Variant Calling, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): [Anna ...

Run this on the trimmed consensus reads (DCS or SSCS) from Du Novo.

Associated Tutorial

This workflows is part of the tutorial Du Novo GTN Tutorial - Variant Calling, available in the GTN

Thanks to...

Tutorial Author(s): Anton Nekrutenko, [Nick ...

Run this on raw duplex sequencing reads to produce duplex consensus sequences.

Associated Tutorial

This workflows is part of the tutorial Du Novo GTN Tutorial - Make Consensus Sequences, available in the GTN

Thanks to...

Tutorial Author(s): Anton Nekrutenko, [Nick ...

Identification of somatic and germline variants from tumor and normal sample pairs tutorial

Associated Tutorial

This workflows is part of the tutorial Identification of somatic and germline variants from tumor and normal sample pairs tutorial, available in the GTN

Features

• Includes [Galaxy Workflow ...

From a reference and a primer scheme generate two masked half-genome references for ITR-aware pox virus sequencing data analysis.

Associated Tutorial

This workflows is part of the tutorial pox-virus-tiled-amplicon-ref-masking, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Analysis of variation within individual COVID-19 samples (Paired End Illumina). Does not use paured

Associated Tutorial

This workflows is part of the tutorial Simple COVID-19 - PE Variation, available in the GTN

Thanks to...

Tutorial Author(s): Marius van den Beek, ...

Reproduce the tutorial analysis at https://training.galaxyproject.org/training-material/topics/variant-analysis/tutorials/mapping-by-sequencing/tutorial.html

Associated Tutorial

This workflows is part of the tutorial Mapping And Molecular Identification Of Phenotype Causing Mutations, available in the GTN

Thanks to...

**Tutorial ...