Du Novo GTN Tutorial - Make Consensus Sequences
3.0

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Workflow Type: Galaxy

Run this on raw duplex sequencing reads to produce duplex consensus sequences.

Associated Tutorial

This workflows is part of the tutorial Du Novo GTN Tutorial - Make Consensus Sequences, available in the GTN

Tutorial Author(s): Anton Nekrutenko, Nick Stoler

SEEK ID: https://dev.workflowhub.eu/workflows/1086?version=1

ID	Name	Description	Type
SRR1799908_forward	SRR1799908_forward	n/a	File
SRR1799908_reverse	SRR1799908_reverse	n/a	File

ID	Name	Description
2	Du Novo: Make families	toolshed.g2.bx.psu.edu/repos/nick/dunovo/make_families/2.15
3	Du Novo: Correct barcodes	toolshed.g2.bx.psu.edu/repos/nick/dunovo/correct_barcodes/2.15
4	Du Novo: Align families	toolshed.g2.bx.psu.edu/repos/nick/dunovo/align_families/2.15
5	Du Novo: Make consensus reads	toolshed.g2.bx.psu.edu/repos/nick/dunovo/dunovo/2.15
6	DCS: Sequence Content Trimmer	toolshed.g2.bx.psu.edu/repos/nick/sequence_content_trimmer/sequence_content_trimmer/0.1
7	SSCS: Sequence Content Trimmer	toolshed.g2.bx.psu.edu/repos/nick/sequence_content_trimmer/sequence_content_trimmer/0.1

ID	Name	Description	Type
_anonymous_output_3	_anonymous_output_3	n/a	File
_anonymous_output_4	_anonymous_output_4	n/a	File
_anonymous_output_5	_anonymous_output_5	n/a	File
n/a	n/a	n/a	File

Added/updated 4 files

Open master 7522a71

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Created: 25th Jun 2024 at 10:55

Last updated: 25th Jun 2024 at 10:56