Workflow for running LotuS2 tool on fungal ITS paired-end sequencing data, to identify the fungi present in the samples

Associated Tutorial

This workflows is part of the tutorial Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2, available in the GTN

Features

• Includes [Galaxy Workflow ...

RAD-Seq de-novo data analysis

Associated Tutorial

This workflows is part of the tutorial de novo Rad Seq, available in the GTN

Thanks to...

Tutorial Author(s): Yvan Le Bras

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Compute and analyze biodiversity metrics with PAMPA toolsuite

Associated Tutorial

This workflows is part of the tutorial Compute and analyze biodiversity metrics with PAMPA toolsuite, available in the GTN

Thanks to...

Tutorial Author(s): Coline Royaux, ...

Biodiversity data exploration

Associated Tutorial

This workflows is part of the tutorial Workflow 'Biodiversity data exploration tuto', available in the GTN

Thanks to...

Tutorial Author(s): Olivier Norvez, [Marie ...

Metabarcoding/eDNA through Obitools

Associated Tutorial

This workflows is part of the tutorial Workflow constructed from history 'Tuto Obitools', available in the GTN

Thanks to...

Tutorial Author(s): Coline Royaux, [Olivier ...

Cleaning GBIF data for the use in Ecology

Associated Tutorial

This workflows is part of the tutorial GBIF data Quality check and filtering workflow Feb-2020, available in the GTN

Thanks to...

Tutorial Author(s): Yvan Le Bras, [Simon ...

This workflow begins from a set of genome assemblies of different samples, strains, species. The genome is first annotated with Funnanotate. Predicted proteins are furtner annotated with Busco. Next, 'ProteinOrtho' finds orthologs across the samples and makes orthogroups. Orthogroups where all samples are represented are extracted. Orthologs in each orthogroup are aligned with ClustalW. The alignments are cleaned with ClipKIT and the concatenation matrix is built using PhyKit. This can be used ...

Visualization of Climate Data using NetCDF Xarray Map Plotting

Associated Tutorial

This workflows is part of the tutorial Xarray_Map_Plotting_Workflow, available in the GTN

Thanks to...

Tutorial Author(s): Soumya Jha

Workflow Author(s): Soumya Jha ...

Compute indicators for Champs blocs

Associated Tutorial

This workflows is part of the tutorial Champs blocs indicators, available in the GTN

Thanks to...

Tutorial Author(s): Marie Josse, Yvan Le Bras ...

RAD-Seq Reference-based data analysis

Associated Tutorial

This workflows is part of the tutorial Workflow Constructed From History 'STACKS RAD: Population Genomics With Reference Genome', available in the GTN

Thanks to...

Tutorial Author(s): Yvan Le Bras ...

RAD-Seq Reference-based data analysis

Associated Tutorial

This workflows is part of the tutorial Ref Based Rad Seq, available in the GTN

Thanks to...

Tutorial Author(s): Yvan Le Bras

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Species distribution modeling

Associated Tutorial

This workflows is part of the tutorial Species Distribution Modeling With Wallace From GBIF - Training Material, available in the GTN

Thanks to...

Tutorial Author(s): Elisa Michon, [Yvan Le ...

Regional GAM

Associated Tutorial

This workflows is part of the tutorial Abundance Index "stacked" Visualization Creation, available in the GTN

Thanks to...

Tutorial Author(s): Clara Urfer, Elisa Michon, ...

Regional GAM

Associated Tutorial

This workflows is part of the tutorial Tutorial regionalGAM Complete Multispecies, available in the GTN

Thanks to...

Tutorial Author(s): Clara Urfer, Elisa Michon, ...

Regional GAM

Associated Tutorial

This workflows is part of the tutorial Phenology "stacked" Visualization Creation, available in the GTN

Thanks to...

Tutorial Author(s): Clara Urfer, Elisa Michon, ...

Regional GAM

Associated Tutorial

This workflows is part of the tutorial Regional GAM Workflow, available in the GTN

Thanks to...

Tutorial Author(s): Clara Urfer, Elisa Michon, [Yvan Le ...

Checking expected species and contamination in bacterial isolate

Associated Tutorial

This workflows is part of the tutorial Checking expected species and contamination in bacterial isolate, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

RAD-Seq to construct genetic maps

Associated Tutorial

This workflows is part of the tutorial Genetic Map Rad Seq Workflow, available in the GTN

Thanks to...

Tutorial Author(s): Yvan Le Bras

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