de novo Rad Seq

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Workflow Type: Galaxy

RAD-Seq de-novo data analysis

Associated Tutorial

This workflows is part of the tutorial de novo Rad Seq, available in the GTN

Thanks to...

Tutorial Author(s): Yvan Le Bras

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1286?version=2

Inputs

ID Name Description Type
Barcodes_SRR034310.tabular Barcodes_SRR034310.tabular n/a
  • File
Population_map.txt Population_map.txt n/a
  • File
SRR034310.fastq SRR034310.fastq n/a
  • File
ref_genome_chromFa.tar ref_genome_chromFa.tar n/a
  • File

Steps

ID Name Description
4 Stacks: process radtags toolshed.g2.bx.psu.edu/repos/iuc/stacks_procrad/stacks_procrad/1.46.0
5 Stacks: process radtags toolshed.g2.bx.psu.edu/repos/iuc/stacks_procrad/stacks_procrad/1.46.0
6 Stacks: process radtags toolshed.g2.bx.psu.edu/repos/iuc/stacks_procrad/stacks_procrad/1.46.0
7 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.69
8 Stacks: de novo map toolshed.g2.bx.psu.edu/repos/iuc/stacks_denovomap/stacks_denovomap/1.46.0
9 Stacks: populations toolshed.g2.bx.psu.edu/repos/iuc/stacks_populations/stacks_populations/1.46.0

Version History

3.0 (latest) Created 16th Jul 2024 at 14:09 by Helena Rasche

Added/updated 4 files


Open master 66318c6

5.0 (earliest) Created 25th Jun 2024 at 11:19 by Helena Rasche

Added/updated 4 files


Frozen 5.0 66dbbf4
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tools
Stacks
FastQC
License
Creative Commons Attribution 4.0 International
Activity

Views: 191   Downloads: 72

Created: 25th Jun 2024 at 11:19

Last updated: 25th Jun 2024 at 11:19

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Total size: 76.5 KB
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