Workflows
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This pipeline analyses data for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.
Analysis of Chromosome Conformation Capture data (Hi-C)
A pipeline to investigate horizontal gene transfer from NGS data
Pipeline for screening for functional components of assembled contigs
Type: Nextflow
Creators: Jasmin Frangenberg, Anan Ibrahim, Louisa Perelo, Moritz E. Beber, James A. Fellows Yates
Submitter: WorkflowHub Sandbox Bot
A fully reproducible and state of the art epitope prediction pipeline.
Pipeline to fetch metadata and raw FastQ files from public databases
Type: Nextflow
Creators: Harshil Patel, Moritz E. Beber and Jose Espinosa-Carrasco
Submitter: WorkflowHub Sandbox Bot
Differential abundance analysis
