Microbial variant calling
Version 1

Workflow Type: Galaxy
No description specified

Inputs

ID Name Description Type
mutant_R1 mutant_R1 n/a n/a
mutant_R2 mutant_R2 n/a n/a
wildtype.fna wildtype.fna n/a n/a
wildtype.gbk wildtype.gbk n/a n/a
wildtype.gff wildtype.gff n/a n/a

Steps

ID Name Description
0 Input dataset
1 Input dataset
2 Input dataset
3 Input dataset
4 Input dataset
5 snippy toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy/3.2
6 JBrowse toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/0.7.0.3

Outputs

ID Name Description Type
snpvcf snpvcf n/a
snpgff snpgff n/a
snptab snptab n/a
snpsum snpsum n/a
snplog snplog n/a
snpalign snpalign n/a
snpconsensus snpconsensus n/a
snpsdepth snpsdepth n/a
snpsbam snpsbam n/a
outdir outdir n/a
output output n/a
Total size: 11.7 KB
help Creators and Submitter
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Submitter
Activity

Views: 597   Downloads: 15

Created: 10th Jul 2020 at 09:38

Last used: 15th Oct 2021 at 03:59

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Version History

Version 1 (earliest) Created 10th Jul 2020 at 09:38 by Ignacio Eguinoa

Added/updated 1 files


Open master 62f30c0

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