Workflows
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Query
Created At
Updated At
Tool
Falco1
FastQC45
MultiQC30
SAMtools24
SCANPY22
Cutadapt16
QUAST16
ggplot215
Bowtie 214
BWA14
BEDTools13
BUSCO13
fastp13
scikit-learn13
Bandage12
JBrowse12
FreeBayes11
Minimap211
mothur11
MaxQuant10
msConvert10
BamTools9
DropletUtils9
HISAT29
kraken29
BCFtools8
DeepTools8
NanoPlot8
seqtk8
STAR8
Trimmomatic8
BLAST7
Flye7
MACS7
StringTie7
taxonomy_krona_chart7
Trim Galore7
Biopython6
FeatureCounts6
gffcompare6
Open Babel6
RSeQC6
Unipept6
UniProt6
COMBAT-TB Workbench5
DESeq25
Galactic Circos5
GEMINI5
gffread5
Merqury5
Prokka5
Salmon5
Unicycler5
annotatemyids4
bed to protein map4
Bwa-mem24
bx-python4
customProDB4
epiScanpy4
Galaxy Image Analysis4
GenomeScope 2.04
KrakenTools4
MEGAHIT4
metaQuantome4
MSstatsTMT4
snippy4
SRA Software Toolkit4
Stacks4
anndata3
Bracken3
Cardinal3
Clustal 2 (Clustal W, Clustal X)3
GOseq3
Gromacs3
HUMAnN23
InterProScan (EBI)3
MetaPhlAn3
MSstats3
MuSiC Deconvolution3
Newick Utilities3
MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC3
pyGenomeTracks3
Racon3
scikit-image3
tb-profiler3
UMI-tools3
Bakta2
Bio3D2
BioRuby2
CellProfiler2
ChEMBL2
chemfp2
compute_sequence_length2
cshl_fastx_reverse_complement2
Diamond2
diaPASEF2
eggNOG-mapper v22
FastTree2
FlashLFQ2
funannotate2
gfastats2
GOEnrichment2
humann2
limma2
lofreq2
MAFFT2
MAKER2
MDAnalysis2
Medaka2
MEME2
MetaNovo2
metaspades2
mzToSQLite2
NGSUtils2
The Protein Data Bank (PDB)2
pilon2
purge_dups2
QIIME2
R2
RAxML2
RDKit2
Recentrifuge2
RepeatMasker2
SALSA2
SeqCode2
Seurat2
snpEff2
staramr2
tbl2gff32
Vcflib2
WoLF PSORT2
Workflow4Metabolomics2
xcms2
ABRicate1
AmberTools1
antiSMASH1
Apollo1
AUGUSTUS1
blockbuster1
Bowtie1
ChemicalToolbox1
ChIPpeakAnno1
ChiRA1
Circos1
Clair31
clusterProfiler1
dada21
edgeR1
EGA1
EGSEA1
European Nucleotide Archive (ENA)1
ewastools1
export2graphlan1
FASTX-Toolkit1
FEELnc1
fgsea1
Filtlong1
FREEC1
GAEVAL1
Galaxy1
GATK1
GECKO1
g:Profiler1
GraPhlAn1
Heinz1
Helixer1
HiCExplorer1
The Immune Epitope Database (IEDB)1
Integron Finder1
iqtree1
ISEScan1
IsoformSwitchAnalyzeR1
IWTomics1
Krona1
LASTZ1
lotus21
MAGeCK1
MALDIquant1
Matchms1
MethylDackel1
miniasm1
miRDeep21
NCBI Resources1
Nextflow1
OBITools1
OMArk1
OptiType1
pangolin1
pathview1
Peakachu1
PfamScan1
phyloseq1
PlasFlow1
PlasmidFinder1
Polypolish1
Prodigal1
Proteinortho1
PYLFIRE1
pymethylprocess1
QualiMap1
RaceID1
RAMClustR1
RapidNJ1
RCAS1
RED1
RIAssigner1
rnaQUAST1
scater1
Seq2HLA1
shovill1
Smudgeplots1
SNAP1
SortMeRNA1
SPAdes1
SuCOS1
Targetfinder.org1
TransDecoder1
TRANSIT1
Trinity1
Trinotate1
VarScan1
VelvetOptimiser1
More...
Workflow type
Galaxy1
Submitter
Helena Rasche1
Space
General1
Reference-based RNA-Seq data analysis
Associated Tutorial
This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Bérénice Batut, ...