Workflows
What is a Workflow?Filters
Generating non-reference protein database for FragPipe discovery
Associated Tutorial
This workflows is part of the tutorial Neoantigen 2: Non-Reference-Database-Generation, available in the GTN
Features
- Includes a Galaxy Workflow Report ...
Generating non-normal protein database for FragPipe discovery
Associated Tutorial
This workflows is part of the tutorial Neoantigen 2: Non-normal-Database-Generation, available in the GTN
Features
- Includes a Galaxy Workflow Report ...
This portion of the workflow produces sets of feature Counts ready for analysis by limma/etc.
Associated Tutorial
This workflows is part of the tutorial mRNA-Seq BY-COVID Pipeline: Counts, available in the GTN
Features
- Includes Galaxy Workflow Tests ...
De novo transcriptome reconstruction with RNA-Seq
Associated Tutorial
This workflows is part of the tutorial De novo transcriptome reconstruction with RNA-Seq, available in the GTN
Thanks to...
Tutorial Author(s): Mallory Freeberg, [Mo ...
RNA-Seq reads to counts
Associated Tutorial
This workflows is part of the tutorial RNA Seq Reads To Counts, available in the GTN
Thanks to...
Tutorial Author(s): Maria Doyle, Belinda Phipson, ...
This workflow completes the first part of the small RNA-seq tutorial from read pre-processing to trimming.e
Associated Tutorial
This workflows is part of the tutorial sRNA Seq Step 1: Read Pre Processing And Removal Of Artifacts (no Grooming), available in the GTN
Thanks to...
Tutorial Author(s): [Mallory ...
Proteogenomics Galaxy Training Network Database Creation
Associated Tutorial
This workflows is part of the tutorial GTN Proteogenomics1 Database Creation, available in the GTN
Thanks to...
Tutorial Author(s): Subina Mehta, [Timothy J. ...
