Workflows
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Given a set of VCF files and the reference genome used to do the mapping and SNP calling, create a multifasta file containing the genomes of all samples and calculate the matrix of pairwise SNP distances
Associated Tutorial
This workflows is part of the tutorial From VCFs to SNP distance matrix, available in the GTN
Thanks to...
**Tutorial ...
workflow-automation
Associated Tutorial
This workflows is part of the tutorial vcf2lineage, available in the GTN
Thanks to...
Tutorial Author(s): Simon Bray, Wolfgang Maier ...
Exome sequencing data analysis for diagnosing a genetic disease
Associated Tutorial
This workflows is part of the tutorial Exome Seq Training Full W Cached Ref, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
**Tutorial ...
Exome sequencing data analysis for diagnosing a genetic disease; short version starting from pre-mapped reads
Associated Tutorial
This workflows is part of the tutorial Exome Seq Training Pre-Mapped W Cached Ref, available in the GTN
Features
- Includes Galaxy Workflow Tests ...
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
Associated Tutorial
This workflows is part of the tutorial Trio Analysis Tutorial, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): [Jasper ...
Microbiome - Variant calling and Consensus Building
Associated Tutorial
This workflows is part of the tutorial Allele-based Pathogen Identification, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes ...
Predict variants and drug resistance from M. tuberculosis sequence samples (Illumina)
Associated Tutorial
This workflows is part of the tutorial TB Variant Analysis v1.0, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes ...
