Analyse Bulk RNA-Seq data in preparation for downstream Pathways analysis with MINERVA

Associated Tutorial

This workflows is part of the tutorial mRNA-Seq BY-COVID Pipeline: Analysis, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Downloads data from NCBI assuming the correct data input format. (I.e. it should be two columns, with a header, Run and Group, where Run is an SRR identifier.)

Associated Tutorial

This workflows is part of the tutorial BY-COVID: Data Download, available in the GTN

Features

• Includes [Galaxy Workflow ...

This portion of the workflow produces sets of feature Counts ready for analysis by limma/etc.

Associated Tutorial

This workflows is part of the tutorial mRNA-Seq BY-COVID Pipeline: Counts, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Galaxy workflow