Starting from the BAM files produced by snippy, generate a table that summarizes the drug-resistance profile for each sample
Associated Tutorial
This workflows is part of the tutorial From BAMs to drug resistance prediction with TB-profiler, available in the GTN
Thanks to...
Tutorial Author(s): [Galo A. ...
Given a set of VCF files and the reference genome used to do the mapping and SNP calling, create a multifasta file containing the genomes of all samples and calculate the matrix of pairwise SNP distances
Associated Tutorial
This workflows is part of the tutorial From VCFs to SNP distance matrix, available in the GTN
Thanks to...
**Tutorial ...
From Fastqs to VCFs and BAMs
Associated Tutorial
This workflows is part of the tutorial From Fastqs to VCFs and BAMs, available in the GTN
Thanks to...
Tutorial Author(s): Galo A. Goig, Daniela Brites, ...
Estimate a phylogenetic tree from whole genome sequencing data for M. tuberculosis
Associated Tutorial
This workflows is part of the tutorial Mtb phylogeny, available in the GTN
Thanks to...
Tutorial Author(s): Christoph Stritt, [Daniela ...
Tree building for "Phylogenetics - Back to basics"
Associated Tutorial
This workflows is part of the tutorial Tree Building (imported from uploaded file), available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): ...
