Mtb phylogeny Version 1
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Download RO CrateGalaxy workflow
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Input alignment | #main/Input alignment | Alignment in fasta format, containing variable positions from variant calling |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | RStudio | Use R to visualize a phylogenetic tree interactive_tool_rstudio |
| 2 | Estimate phylogeny with RAxML | Maximum likelihood-based inference of a phylogenetic tree toolshed.g2.bx.psu.edu/repos/iuc/raxml/raxml/8.2.4+galaxy2 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Best-scoring ML Tree | #main/Best-scoring ML Tree | n/a |
|
| Info | #main/Info | n/a |
|
Version History
3 (earliest) Created 22nd Apr 2024 at 11:18 by Helena Rasche
Added/updated 3 files
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master2b6e738
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Views: 22
Created: 22nd Apr 2024 at 11:18
Last updated: 22nd Apr 2024 at 11:18
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